Changeset 137 for plone4bio.biosql

Timestamp:

02/19/10 13:58:00 (2 years ago)

Author:

mauro

Message:

index taxonomy

Location:

plone4bio.biosql/trunk/src/plone4bio/biosql

Files:

• content/seqrecord.py (modified) (1 diff)
• profiles/default/catalog.xml (modified) (2 diffs)

plone4bio.biosql/trunk/src/plone4bio/biosql/content/seqrecord.py

@@ -175 +175 @@
     accessions = property(fget=getAccessions)
 
+    def getTaxonomy(self):
+        if self.annotations.has_key('taxonomy'):
+            return self.annotations['taxonomy']
+        else:
+            return []
+    taxonomy = property(fget=getTaxonomy)
+
+
 InitializeClass(BioSQLSeqRecord)
 

plone4bio.biosql/trunk/src/plone4bio/biosql/profiles/default/catalog.xml

@@ -21 +21 @@
     <indexed_attr value="organism" />
   </index>
+  <index name="taxonomy" meta_type="KeywordIndex">
+    <indexed_attr value="taxonomy" />
+  </index>
   <index name="accessions" meta_type="KeywordIndex">
     <indexed_attr value="accessions" />
@@ -26 +29 @@
   <index name="keywords" meta_type="FieldIndex" />
   <index name="identifier" meta_type="FieldIndex" />
+
+  <column value="accessions"/>
+  <column value="taxonomy"/>
+  <column value="organism"/>
 </object>