Changeset 112 for plone4bio.biosql/trunk/src/plone4bio/biosql/content/seqrecord.py

Timestamp:

10/18/09 21:40:10 (3 years ago)

Author:

mauro

Message:

* rebuild catalog action on biosqlroot's view and triggered by modify event
* choice seqrecord key field (fix #6)

Files:

• plone4bio.biosql/trunk/src/plone4bio/biosql/content/seqrecord.py (modified) (1 diff)

plone4bio.biosql/trunk/src/plone4bio/biosql/content/seqrecord.py

@@ -95 +95 @@
         # from stxnext import pdb;pdb.set_trace()
         if self._v_seqrecord is None or reload:
-            self._v_seqrecord = self._getBiodatabase().getDatabase()[self.id]
+            if self.getBioSQLRoot().seqrecord_key == 'accession':
+                self._v_seqrecord = self._getBiodatabase().getDatabase().get_Seq_by_acc(self.id)
+            elif self.getBioSQLRoot().seqrecord_key == 'version':
+                self._v_seqrecord = self._getBiodatabase().getDatabase().get_Seq_by_ver(self.id)
+            else: # default = 'bioentry_id':
+                self._v_seqrecord = self._getBiodatabase().getDatabase()[self.id]
+            logger.debug("%s -> %r" % (self.id, self._v_seqrecord))
         return self._v_seqrecord