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Revision 75, 0.9 KB
(checked in by mauro, 2 years ago)
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| 1 | BioPerl Prerequisities |
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| 2 | ====================== |
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| 3 | |
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| 4 | Debian/Ubuntu |
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| 5 | ------------- |
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| 6 | |
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| 7 | :: |
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| 8 | |
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| 9 | Prerequisite packages: |
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| 10 | |
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| 11 | sudo apt-get install perl bzip2 unzip curl |
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| 12 | sudo apt-get install libconfig-ini-simple-perl libgd-gd2-perl |
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| 13 | |
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| 14 | DON'T INSTALL THE BIOPERL PACKAGE PROVIDED BY YOUR DISTRIBUTION, |
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| 15 | UNLESS IT IS > 1.6.0 |
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| 16 | |
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| 17 | WE NEED THE LATEST BIOPERL !! |
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| 18 | |
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| 19 | :: |
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| 20 | |
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| 21 | Execute the following as root: |
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| 22 | |
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| 23 | rm -rf BioPerl-1.6.0.tar.gz BioPerl-1.6.0 |
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| 24 | wget http://bioperl.org/DIST/BioPerl-1.6.0.tar.gz |
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| 25 | tar zxvf BioPerl-1.6.0.tar.gz |
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| 26 | cd BioPerl-1.6.0 |
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| 27 | perl Makefile.PL # you may safely answer yes to all the questions |
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| 28 | make |
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| 29 | sudo make install |
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| 30 | |
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| 31 | rm -rf Bio-Graphics-1.93.tar.gz Bio-Graphics |
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| 32 | wget http://search.cpan.org/CPAN/authors/id/L/LD/LDS/Bio-Graphics-1.93.tar.gz |
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| 33 | tar zxvf Bio-Graphics-1.93.tar.gz |
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| 34 | cd Bio-Graphics-1.93 |
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| 35 | perl Makefile.PL # you may safely answer yes to all the questions |
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| 36 | make |
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| 37 | sudo make install |
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