| 1 |
plone4bio |
|---|
| 2 |
========= |
|---|
| 3 |
|
|---|
| 4 |
Overview |
|---|
| 5 |
-------- |
|---|
| 6 |
|
|---|
| 7 |
The *plone4bio* package provides the possibility to add a new content |
|---|
| 8 |
type, called `sequence', than can be either written by hand or imported |
|---|
| 9 |
from a FASTA file, and to apply to that sequence a program, called |
|---|
| 10 |
`predictor', that gives a back a plot of predicted probabilites for the |
|---|
| 11 |
sequence to have a given property (the property that the predictor tries |
|---|
| 12 |
to determine). |
|---|
| 13 |
|
|---|
| 14 |
A predictor can try to assess if a protein sequence is trans-membrane, |
|---|
| 15 |
whether a signal peptide exists, and so on. |
|---|
| 16 |
|
|---|
| 17 |
The *plone4bio.base* is a package that defines a skeleton |
|---|
| 18 |
predictor: deriving from that it is possible to integrate any other |
|---|
| 19 |
application and visualize all the results together. A predictor can be |
|---|
| 20 |
a pure Python program or another application wrapped to be usable by the |
|---|
| 21 |
interface defined in the *plone4bio.base* package. |
|---|
| 22 |
|
|---|
| 23 |
Developer Notes |
|---|
| 24 |
--------------- |
|---|
| 25 |
|
|---|
| 26 |
The plone4bio* plone products are mainly developed on Debian Stable, so |
|---|
| 27 |
they are mainly tested in that environment. Usually there should be no |
|---|
| 28 |
problem in installing the products in GNU/Linux Zope/Plone environments. |
|---|
| 29 |
|
|---|
| 30 |
This product is produced independently from the product Plone, and carries no |
|---|
| 31 |
guarantee from the Plone Foundation about quality, suitability or anything |
|---|
| 32 |
else. The supplier of this product assumes all responsibility for it. |
|---|
| 33 |
|
|---|
| 34 |
Maintainer |
|---|
| 35 |
---------- |
|---|
| 36 |
|
|---|
| 37 |
Mauro Amico (amico AT biodec DOT com) is the active maintainer of the |
|---|
| 38 |
*plone4bio.base* framework. |
|---|
